Publication Type
Conference Paper
Book Title
Proceedings of the 2024 International Conference on Computational Science and Computational Intelligence (CSCI)
Publication Date
Page Numbers
1 to 14
Publisher Location
Germany
Conference Name
2024 International Conference on Computational Science and Computational Intelligence (CSCI)
Conference Location
Las Vegas, Nevada, United States of America
Conference Sponsor
Various
Conference Date
-
Abstract
We study graph neural network learning for transcriptomics with limited amount of labeled data. Our study reveals that simple GNN architectures perform well and do not suffer from over-fitting as the more sophisticated ones. Our study shows that although contrastive learning as a pretraining strategy has been successful in predicting properties such as formation and binding energy, it is not effective for transcriptomics.
